PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047140.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 100aa    MW: 11233.8 Da    PI: 9.2571
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047140.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.63.8e-12934126
                  --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                  ++++ C+++ rtG C++G++C+F+H+
  EcC047140.20  9 PGEPDCSYYIRTGLCRFGATCRFNHP 34
                  5799*********************8 PP

2zf-CCCH41.81.8e-135680327
                  S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  +++C+++++tGtCk+G++CkF+H++
  EcC047140.20 56 QPECQYYLKTGTCKFGATCKFHHPR 80
                  799********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.295836IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-5835IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-81034IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-61336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-51434IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3565381IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-65380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-75682IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-115680IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-65980IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
ESGTYPERPG EPDCSYYIRT GLCRFGATCR FNHPSDRKLA IANARMKGEY PERVGQPECQ  60
YYLKTGTCKF GATCKFHHPR DKAGIAGKVA LNILGYPFRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038283.16e-67PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF93e-62ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A059D2Y19e-68A0A059D2Y1_EUCGR; Uncharacterized protein
TrEMBLA0A059D1G05e-67A0A059D1G0_EUCGR; Uncharacterized protein
TrEMBLA0A059D2746e-67A0A059D274_EUCGR; Uncharacterized protein
STRINGVIT_04s0023g00370.t011e-60(Vitis vinifera)
STRINGPOPTR_0013s08490.14e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.18e-62zinc finger protein 1